Index

A

add_figure() (cyclum.illustration.FigureWriter method)

add_figure_and_write() (cyclum.illustration.FigureWriter method)

C

calc_pkm() (in module cyclum.preproc) calc_pkm_for_df() (in module cyclum.preproc) calc_tpm() (in module cyclum.preproc) calc_tpm_for_df() (in module cyclum.preproc) cell_sparsity() (in module cyclum.filter) close() (cyclum.core.PreloadCyclum method) correct() (cyclum.core.PreloadCyclum method) Cyclum (class in cyclum.core)

cyclum (module) cyclum.core (module) cyclum.evaluation (module) cyclum.filter (module) cyclum.illustration (module) cyclum.preproc (module) cyclum.smart_train (module) cyclum.writer (module)

F

FigureWriter (class in cyclum.illustration) fit() (cyclum.core.PreloadCyclum method) (cyclum.core.PreloadNaiveCyclum method)

for_df() (in module cyclum.preproc)

G

gene_sparsity() (in module cyclum.filter)

generate() (cyclum.core.PreloadCyclum method)

I

int32_to_bytes() (in module cyclum.writer)

P

parzen_estimate() (in module cyclum.evaluation) periodic_parzen_estimate() (in module cyclum.evaluation) plot_cell_sparsity() (in module cyclum.illustration) plot_gene_sparsity() (in module cyclum.illustration) plot_multi_distr() (in module cyclum.illustration) plot_pair_color() (in module cyclum.illustration) plot_round_color() (in module cyclum.illustration)

plot_round_distr_color() (in module cyclum.illustration) plot_round_distr_color2() (in module cyclum.illustration) precision_estimate() (in module cyclum.evaluation) predict() (cyclum.core.PreloadCyclum method) PreloadCyclum (class in cyclum.core) PreloadCyclum2 (class in cyclum.core) PreloadNaiveCyclum (class in cyclum.core)

R

read_df_from_binary() (in module cyclum.writer)

read_matrix_from_binary() (in module cyclum.writer)

S

save() (cyclum.core.PreloadCyclum method)

SmartModel (class in cyclum.smart_train)

T

train() (cyclum.core.PreloadCyclum2 method) (cyclum.smart_train.SmartModel method)

W

write() (cyclum.illustration.FigureWriter method)

write_df_to_binary() (in module cyclum.writer) write_matrix_to_binary() (in module cyclum.writer)