Index

A

add_figure() (cyclum.illustration.FigureWriter method)

add_figure_and_write() (cyclum.illustration.FigureWriter method) AutoEncoder (class in cyclum.models.ae)

B

BaseAutoEncoder (class in cyclum.models.ae)

BaseAutoEncoder.MyCallback (class in cyclum.models.ae)

C

circular_unit() (cyclum.models.ae.BaseAutoEncoder static method) cyclum (module) cyclum.evaluation (module) cyclum.hdfrw (module) cyclum.illustration (module)

cyclum.models (module) cyclum.models.ae (module) cyclum.tuning (module) cyclum.writer (module) CyclumAutoTune (class in cyclum.tuning)

D

decoder() (cyclum.models.ae.BaseAutoEncoder static method)

E

encoder() (cyclum.models.ae.BaseAutoEncoder static method)

F

FigureWriter (class in cyclum.illustration)

G

get_weight() (cyclum.models.ae.AutoEncoder method)

H

hdf2mat() (in module cyclum.hdfrw)

I

int32_to_bytes() (in module cyclum.writer)

L

linear_bypass() (cyclum.models.ae.BaseAutoEncoder static method) linear_unit() (cyclum.models.ae.BaseAutoEncoder static method)

load() (cyclum.models.ae.BaseAutoEncoder method) logistic_unit() (cyclum.models.ae.BaseAutoEncoder static method)

M

mat2hdf() (in module cyclum.hdfrw)

O

on_epoch_end() (cyclum.models.ae.BaseAutoEncoder.MyCallback method)

on_train_begin() (cyclum.models.ae.BaseAutoEncoder.MyCallback method)

P

parzen_estimate() (in module cyclum.evaluation) periodic_parzen_estimate() (in module cyclum.evaluation) plot_cell_sparsity() (in module cyclum.illustration) plot_gene_sparsity() (in module cyclum.illustration) plot_multi_distr() (in module cyclum.illustration) plot_pair_color() (in module cyclum.illustration)

plot_round_color() (in module cyclum.illustration) plot_round_distr_color() (in module cyclum.illustration) plot_round_distr_color2() (in module cyclum.illustration) pre_train() (cyclum.models.ae.AutoEncoder method) precision_estimate() (in module cyclum.evaluation) predict_linear_bypass() (cyclum.models.ae.AutoEncoder method) predict_pseudotime() (cyclum.models.ae.AutoEncoder method)

R

read_df_from_binary() (in module cyclum.writer)

read_matrix_from_binary() (in module cyclum.writer)

S

save() (cyclum.models.ae.BaseAutoEncoder method) show_bar() (cyclum.tuning.CyclumAutoTune method)

show_elbow() (cyclum.tuning.CyclumAutoTune method) show_structure() (cyclum.models.ae.BaseAutoEncoder method)

T

train() (cyclum.models.ae.AutoEncoder method)

W

write() (cyclum.illustration.FigureWriter method)

write_df_to_binary() (in module cyclum.writer) write_matrix_to_binary() (in module cyclum.writer)